NORTHEASTERN TROUT WATERS
- Brule River – Florence
- Eau Claire – East Branch – Langlade
- Hunting River – Langlade
- Lily River – Langlade
- Lily River – East Branch – Langlade
- Wolf River – Langlade
- Big Hay Meadow Creek – Lincoln
- Copper River – Lincoln
- Prairie River – Lincoln
- Eagle Creek – Marinette
- Lower Peshtigo River – Marinette
- Pemebonwon River – Marinette
- Wausaukee River – Marinette
- Brule River – Nicolet
- Elvoy Creek – Nicolet
- Oconto River – North Branch – Oconto
- Oconto River – South Branch – Oconto
NORTHWESTERN TROUT WATERS
- White River – Ashland
- Namekagan River – Bayfield
- White River – Bayfield
- Bois Brule River – Douglas
- Carpenter Creek – Price
- Spirit River – Price
- Namekagan River – Sawyer
CENTRAL EASTERN TROUT WATERS
- Silver Creek – Fond Du Lac
- Plover River – Marathon
- Caves Creek – Marquette
- Chaffee Creek – Marquette
- Lunch Creek – Marquette
- Mecan River – Marquette
- Neenah Creek – Marquette
- Tagatz Creek – Marquette
- Weddle Creek – Marquette
- Westfield Creek – Marquette
- Flume Creek – Portage
- Little Wolf River – Portage
- Spring Creek – Portage
- Tomorrow River – Portage
- Waupaca River – Portage
- Bear Creek – Richland
- Bear Creek – Saux
- Comet Creek – Shawano
- Mullet Creek – Sheboygan
- Comet Creek – Waupaca
- Flume Creek – Waupaca
- Little Wolf River – Waupaca
- Waupaca River – Waupaca
- Lunch Creek – Waushara
- Mecan River – Waushara
- Pine River – Waushara
- Weddle Creek – Waushara
- White River – West Branch – Waushara
- Willow Creek – Waushara
CENTRAL WESTERN TROUT WATERS
- Duncan Creek – Chippewa
- McCann Creek – Chippewa
- Hay River – Dunn
- Otter Creek – Dunn
- Halls Creek – Jackson
- Pigeon Creek – Jackson
- Robinson Creek – Jackson
- Trempealeau River – Jackson
- Lemonweir River – Juneau
- Little Lemonweir – Juneau
- Onemile Creek – Juneau
- Big Rib River – Marathon
- Little Lemonweir – Monroe
- Kinnickinnic River – Pierce
- Lost Creek – Pierce
- Rush River – Pierce
- Trimbelle River – Pierce
- Apple River – Polk
- Ten Mile Creek – Portage
- Apple River – St. Croix
- Kinnickinnic River – St. Croix
- Parker Creek – St. Croix
- Tiffany Creek – St. Croix
- Willow River – St. Croix
- Big Rib River – Taylor
- Big Woods Creek – Taylor
- Black River – Taylor
- Beaver Creek – North Branch – Trempealeau
- Buffalo River – Trempealeau
- Elk Creek – Trempealeau
SOUTHEASTERN TROUT WATERS
- Rowan Creek – Columbia
- Black Earth Creek – Dane
- Mount Vernon Creek – Dane
- Sugar River – Dane
- Pike River – Kenosha
- Allen Creek – Rock
- Turtle Creek – Rock
- Turtle Creek – Walworth
- Scuppernong Creek – Waukesha
- Ten Mile Creek – Wood
SOUTHWESTERN TROUT WATERS
- Trout Creek – Chippewa
- Knapp Creek – Crawford
- Richland Creek – Crawford
- Big Green River – Grant
- Blue River – Grant
- Borah Creek – Grant
- Crooked Creek – Grant
- Fennimore Fork – Grant
- Grant River – Grant
- Six Mile Branch – Grant
- Hefty Creek – Green
- Skinner Creek – Green
- Otter Creek – Iowa
- Yellowstone River – Iowa
- Bohemian Valley Creek – La Crosse
- La Crosse River – Monroe
- Fancy Creek – Richland
- Knapp Creek – Richland
- Mill Creek – Richland
- Pine River – Richland
- Willow Creek – Richland
- Coon Creek – Vernon
- Kickapoo River – West Branch – Vernon
- Rullands Coulee Creek – Vernon
- Spring Coulee Creek – Vernon
- Tainter Creek – Vernon
- Timber Coulee Creek – Vernon